FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929774

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929774
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440307
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT25440.5777786862348316No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC24070.5466640321412105No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA20900.47466881062531374No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA19850.45082181296231943No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA18540.42106984444944096No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA16110.3658810784293686No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15360.348847508670087No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT14850.3372646812337755No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT13120.2979739136556993No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13010.29547565675767135No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA12570.2854826291655595No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11410.2591373746045373No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT9790.22234486392448904No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT9590.2178025786553473No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG9430.2141687504400339No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT9040.20531129416520746No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG8450.19191155262123927No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC8380.19032175277703967No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7980.18123718223875615No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG7700.1748779828619577No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC7550.17147126891010137No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6760.15352924209699143No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6750.15330212783353434No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA6740.15307501357007725No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6560.14898695682784965No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6480.14717004272019296No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5720.1299093586974543No Hit
CAGCGTCGGAATGGAGCGACGGGTCTTGATACCGTTGCCGCTTT5680.12900090164362593No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5470.12423150211102708No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC4970.11287578893817268No Hit
CAGGATCATCAGGCAATCGGCCAGAGCGCGATGAGCACCCGCAG4950.1124215604112585No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC4880.11083176056705889No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG4770.10833350366903094No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG4640.10538101824408878No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA4590.10424544692680335No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)