FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929776

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929776
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences423395
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC23890.5642485149801013No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT23070.5448812574546227No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA19010.44898971409676547No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA17500.4133256179217988No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA17140.40482291949597893No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA15870.37482728893822553No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA14800.3495553797281498No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT13700.3235749123159225No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13130.310112306475041No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA12580.2971220727689273No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT12330.29121742108433024No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11710.27657388490652934No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT9140.2158740655888709No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG8780.20737136716305105No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8460.19981341300676675No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG8290.1957982498612407No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT8250.19485350559170514No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC8080.19083834244617912No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC7610.1797375972791365No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7580.17902903907698484No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG7480.176667178403146No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG7300.17241582919023607No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6680.1577722930124352No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA6460.15257619952998971No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6240.14738010604754426No Hit
CAGCGTCGGAATGGAGCGACGGGTCTTGATACCGTTGCCGCTTT5760.13604317481311778No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5600.1322641977349756No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5330.12588717391561072No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5090.12021870829839747No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC4990.11785684762455863No Hit
CAGGATCATCAGGCAATCGGCCAGAGCGCGATGAGCACCCGCAG4890.11549498695071977No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC4800.11336931234426481No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG4590.10840940492920323No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG4530.10699228852489992No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA4320.10203238110983834No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)