FastQCFastQC Report
Sun 21 May 2023
EGAF00007929777

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929777
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences423395
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT42200.9967052043599949No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37690.8901852879698626No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC32030.7565039738305838No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG23600.5573991190259687No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG18290.43198431724512565No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA17720.41852171140424427No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16380.38687277837480366No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC14780.34908300759338207No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG14770.3488468215259982No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12770.30160960804922116No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG12650.2987753752406146No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG12570.2968858867015435No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG9530.22508532221684244No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8940.2111503442411932No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG8820.2083161114325866No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8800.2078437392978188No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8230.19438113345693736No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT8150.1924916449178663No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8060.1903659703114113No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7740.182808016155127No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7520.17761192267268153No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7390.17454150379669103No Hit
TCCTACACCAACGGCAAACTGACTATCACCC7360.17383294559453938No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7300.17241582919023607No Hit
ATGTCCAACATGGACATCGATGGTATTAACA7290.1721796431228522No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6920.16344075862964844No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG6340.14974196672138312No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5630.1329727559371273No Hit
ATGGGTGCAGACATGGTAGAACTGGACATTC5610.13250038380235948No Hit
ACCCGCCACATTGACGCAAAAGCAGTTTACG5300.12517861571345906No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5180.12234438290485243No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5160.12187201077008467No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC4960.11714828942240697No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG4630.10935414919873876No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4290.10132382290768667No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA4270.1008514507729189No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)