FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007929778

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929778
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences524251
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA16930.3229369138065545No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15690.29928412153720263No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG15250.29089119524807777No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG10010.1909390730775907No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC9830.1875056032320396No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7980.1522171631527646No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7690.14668546173493233No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7260.1384832837705603No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6720.12818287423390703No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5620.10720055851109489No Hit
GGTATCGGAAGAGTCGTCATCCTCTTCTTCGGAGTCTTCTACCG5400.10300409536653245No Hit
TTTCGCACGGTTCATTACAGAGGTAACTTCGTTGCCGCGGGTAG5290.10090586379425123No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)