FastQCFastQC Report
Wed 31 May 2023
EGAF00007929781

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929781
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504467
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45390.8997615304866323No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35730.7082722953136676No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG15130.2999205101622108No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14750.29238780732931985No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10450.20714932790450116No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA9450.18732642571268288No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT8970.1778114326606101No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6570.1302364674002462No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6550.12984000935640985No Hit
CGTATGCCGACTACTAGCACCGCTTCCCAGA6450.12785771913722802No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5960.11814449706323703No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5850.11596397782213702No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5750.1139816876029552No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5210.10327732041937332No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5190.10288086237553697No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)