FastQCFastQC Report
Sun 21 May 2023
EGAF00007929782

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929782
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences399646
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14100.35281223883136575No Hit
GTAGTTCGGGTCGATATCTGCGACACCTTCGGCGTCCAGCATTT12040.3012666209595492No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT10140.2537245462234077No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8480.21218778619077885No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8430.2109366789608804No Hit
CTGACCAACACCGGAGAAGTCGCCAACGCCTTTGTTAGCAGAGG8130.20343003558148964No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT6690.16739814736041395No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6540.16364482567071859No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6080.15213463915565276No Hit
TTTGTCGATGGTCTGCTCCAGGTTACCAAAGAAGCCTGCTTTTG5940.14863153891193706No Hit
GCCCGCACCTTCTTCTTCTTCCTCTTCCTCCAGGCCGATGCTAG5770.1443777743302823No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5540.1386226810727494No Hit
GTCGTGACGTTTCAGCGGGAATGGGCCACCCAGATCGTCGATGG4470.11184898635292234No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG4290.10734500032528788No Hit
GCCCTCAACATCCAGCATTTCCATGTCGCCCAGGGTAAACTTAG4220.10559345020343003No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC4200.10509300731147066No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA4140.1035916786355925No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)