FastQCFastQC Report
Sun 21 May 2023
EGAF00007929783

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929783
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences399646
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA20870.5222121577596173No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG19030.4761714116993539No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14190.355064231845183No Hit
CCGGATTTTGAACAGAACATTGCGACCACCA12790.32003322940802614No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9210.23045395174729638No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG8730.2184433223402711No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8380.2096855717309819No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA7050.17640611941568288No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6950.17390390495588595No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6690.16739814736041395No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6450.16139283265690135No Hit
GAACCGATCTACGCTACCATCGACGACCTGG6250.1563884037373075No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC5980.14963242469585583No Hit
GTGAACGCAAAAATTGATCGCCTGAACCAGA5100.12761293744964292No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG4270.1068445574333285No Hit
TTCAACAAAAAACAGAGCTCCGACGTAAAAG4250.1063441145413691No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG4200.10509300731147066No Hit
GCCGGTGATTCCCCAACTCCGGGCCCGTCCA4110.10284101429765342No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT4090.10234057140569404No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC4080.10209034995971435No Hit
ATGACCGTACTGAACACCAAAGCTGGTGTTA4010.1003387998378565No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG4000.10008857839187682No Hit

[OK]Adapter Content

Adapter graph