FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929784

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929784
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences380230
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13050.34321331825474055No Hit
GTAGTTCGGGTCGATATCTGCGACACCTTCGGCGTCCAGCATTT12060.31717644583541543No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9730.2558977461010441No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8380.22039292007469163No Hit
CTGACCAACACCGGAGAAGTCGCCAACGCCTTTGTTAGCAGAGG7640.20093101543802436No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7590.19961602188149277No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6710.1764721352865371No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT6630.17436814559608657No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5710.15017226415590562No Hit
GCCCGCACCTTCTTCTTCTTCCTCTTCCTCCAGGCCGATGCTAG5550.14596428477500462No Hit
TTTGTCGATGGTCTGCTCCAGGTTACCAAAGAAGCCTGCTTTTG5410.1422823028167162No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5070.13334034663230152No Hit
GCCCTCAACATCCAGCATTTCCATGTCGCCCAGGGTAAACTTAG4810.1265023801383373No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG4450.11703442653130999No Hit
GTCGTGACGTTTCAGCGGGAATGGGCCACCCAGATCGTCGATGG4340.11414144070694054No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC4090.10756647292428267No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG3970.1044104883886069No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG3950.10388449096599425No Hit
ATAATCCCAAGATTCGTCCAGGTCCGCCGGGTCGATGGACGGTG3940.10362149225468795No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)