FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929785

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929785
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences380230
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG49081.290797675091392No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19080.5018015411724482No Hit
CCGGATTTTGAACAGAACATTGCGACCACCA12670.3332193672251006No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12570.3305893801120374No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8350.21960392394077272No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG8150.21434394971464638No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8110.21329195486942112No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6810.17910212239960024No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6760.1777871288430687No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6110.16069221260815822No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6020.15832522420640138No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC5700.14990926544459934No Hit
GAACCGATCTACGCTACCATCGACGACCTGG5650.14859427188806776No Hit
GTGAACGCAAAAATTGATCGCCTGAACCAGA4900.12886936854009415No Hit
TTCAACAAAAAACAGAGCTCCGACGTAAAAG4750.12492438787049943No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG4500.11834942008784156No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT4230.11124845488257107No Hit
GCCGGTGATTCCCCAACTCCGGGCCCGTCCA4200.11045945874865212No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC4200.11045945874865212No Hit
TCCTACACCAACGGCAAACTGACTATCACCC3860.10151750256423744No Hit

[OK]Adapter Content

Adapter graph