FastQCFastQC Report
Sun 21 May 2023
EGAF00007929794

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929794
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences406943
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA34200.8404125393482625No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA23500.5774764524761453No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21420.5263636430654907No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA20620.506704870215239No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10010.24598039528877508No Hit
CAGCGCTTCCACCTCGCGAGAAACTGCATCAGTGAAGCCGGTGC9000.22116119456533226No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC8850.21747517465591004No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7870.19339317791435165No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7500.1843009954711102No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6520.1602189987295518No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG6420.1577616521232703No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT6230.15309269357133554No Hit
CTTGCGAGACGCTGCGCTAGTAGGGGCAACCGCCGGGTCCGGTT6030.1481780003587726No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG5710.1403144912186719No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5520.1356455326667371No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5210.12802775818726456No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5160.12679908488412384No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC4960.12188439167156088No Hit
GGATTCCTTCAGCAGGTTCACCTGTTCGCAGATCTGGTTGGTAA4670.11475808651334463No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4550.11180927058580686No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC4490.11033486262203797No Hit
TTCGCAAATCTGGTTGGTGAAACCGGAGCCAAACGCGTTGCCCA4300.10566590407010319No Hit
TGGGTCCGGCTTGCGGGTAGCTGCGCTAGTCGGGGCGACAGCCG4250.10443723076696246No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)