FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929796

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929796
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences419167
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT24350.5809140509629813No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG21720.5181705620910043No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA20600.4914509014306947No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG17940.4279917073624594No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA17360.414154740234799No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG17090.4077133934684744No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT15450.36858817607302097No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG13880.33113293746883704No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG13590.3242144539050068No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG12060.28771348889583387No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11890.2836578261170369No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG8970.2139958536812297No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG8210.19586465537601958No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7230.17248495229824867No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7100.16938356311446273No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG7070.16866785791820443No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6960.16604360553192402No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG6560.15650086958181345No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5980.1426639024541531No Hit
ACGTTCCACAGTGTCTTCGGCGGTGAAAATCGCGAACCAACCCA5790.1381311028778506No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA5650.1347911452953119No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5400.12882693532649278No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG5070.12095417816765155No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG4720.11260428421130479No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG4700.11212714741379928No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)