FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929797

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929797
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences419167
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT43261.0320468930044588No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA30100.7180908802458209No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT24660.588309671324317No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG21730.5184091304897571No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG18850.4497014316489609No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC18410.43920442210383925No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG18290.4363416013188061No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG14300.3411528102164531No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13660.3258844326962762No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG13520.3225444751137375No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11940.2848506681108007No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11620.27721647935071225No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8850.2111330328961965No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8760.20898591730742164No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG8160.19467181338225578No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7640.18226625664711202No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG7500.1789262990645733No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7130.17009926831072103No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5930.1414710604603893No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT5700.1359839872890757No Hit
GCGTCTCGCGTACTGGAAGGTACTAAAAAGG5580.13312116650404254No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG5280.12596411454145962No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG4990.11904563097762944No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4330.10330011665994698No Hit

[OK]Adapter Content

Adapter graph