FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007929799

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929799
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences414127
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA36510.8816136112834951No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27380.6611498405078635No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG18330.4426178442844828No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17030.411226507810406No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15000.3622077285470399No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11700.28252202826669115No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8310.20066308161506013No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8030.19390187068218204No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6830.16492525239841885No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5930.14319278868559646No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5190.1253238740772758No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4610.11131850857345695No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4610.11131850857345695No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4280.10334993854542206No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)