FastQCFastQC Report
Wed 31 May 2023
EGAF00007929800

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929800
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences380524
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT17610.46278289937034195No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16180.42520314093197803No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12230.3213989130777559No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11480.30168924956113147No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9990.2625327180414376No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8540.22442736857596368No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7390.19420588451713952No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7340.19289190694936456No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6750.17738697164962No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5940.1561005350516656No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5120.13455130294015621No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC4690.12325109585729153No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4630.12167432277596156No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4100.10774616055754696No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA3970.10432981888133207No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG3850.10117627271867215No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)