FastQCFastQC Report
Sun 21 May 2023
EGAF00007929801

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929801
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences380524
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG55191.450368439310004No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA32430.8522458504588409No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24660.6480537364266117No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15680.4120633652542284No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14250.37448360681586446No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10680.2806656084767321No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7080.18605922359693475No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6790.17843815370383997No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6180.16240762737698541No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5140.1350768939672662No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5000.1313977567774963No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4250.11168809326087185No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4040.10616938747621701No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4030.10590659196266201No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)