FastQCFastQC Report
Sun 21 May 2023
EGAF00007929803

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929803
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences391305
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31170.7965653390577683No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG18970.4847880809087541No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14340.3664660558899069No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11560.29542172985267245No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10020.2560662398896002No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8730.22309962816728637No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7790.19907744598203447No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7780.19882189085240415No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7640.19524411903757938No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6660.17019971633380612No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5960.15231085725968235No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5440.13902199051890468No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4900.12522201351886636No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4040.10324427237065716No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT3920.10017761081509309No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)