FastQCFastQC Report
Sun 21 May 2023
EGAF00007929805

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929805
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences365758
Sequences flagged as poor quality0
Sequence length31
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG55201.5091946040824806No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23100.6315651332301686No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16740.45767966797718707No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15900.4347136631324537No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14070.3846805811492845No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12510.34202942929477964No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11650.3185166148108859No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9200.2515324340137468No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9200.2515324340137468No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9110.24907179063752535No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8350.22829302434943322No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7300.19958551829351648No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7090.19384401708233312No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7070.19329720744317283No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7040.19247699298443233No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6780.18536846767534818No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6600.18044718092290532No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6590.18017377610332513No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6400.17497908453130212No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6130.1675971544026378No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6080.16623013030473702No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5810.1588482001760727No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5720.15638755679985128No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5480.14982584112992742No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4890.13369495677469803No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG4760.13014069412015597No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA4290.11729066759988845No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4240.11592364350198765No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4190.11455661940408686No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC4120.11264278566702575No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT3940.10772149891458285No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG3880.1060810699971019No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)