FastQCFastQC Report
Wed 31 May 2023
EGAF00007929808

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929808
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences340571
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG15970.4689183753167475No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG14100.4140105881005723No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG13160.3864098822272008No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12270.3602772990066682No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG11400.3347319648472712No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11380.33414471578613564No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG11240.3300339723581867No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11150.32739135158307664No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG10620.31182925146298424No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10030.2945054041594851No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG9840.2889265380786972No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG9800.2877520399564261No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG8650.25398521894113124No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG8400.24664460567693666No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8210.2410657395961488No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7990.2346059999236576No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7160.21023516388653177No Hit
CTTTGGGTGTTTCTGTTTCTGACGCGCTTCGCTAGAGGTACGTT7090.20817979217255728No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG6570.19291131658303262No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG6420.1885069486245159No Hit
AATCAGCGGGTTGAATGCCTGTTTTACCTTTTTCGGGTGTTTCT6040.1773492164629402No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5810.1705958522598812No Hit
GATCGCCGGGGACGGAGTTTCCGGACGAGCAGGGGATTCCCAGG5730.16824685601533895No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG5350.15708912385376325No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA5230.15356562948694988No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG5190.15239113136467874No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG5100.1497485105895687No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5020.14739951434502643No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG4890.14358239544764528No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT4710.13829715389742522No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG4620.13565453312231518No Hit
GATTGCCGGAGATGGAGTTTCCGGACGCGCCGGAGATTCCCAGG4490.131837414224934No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG4180.12273505377733276No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4100.12038605753279052No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4070.11950518394108717No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC3780.1109900725546215No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG3750.11010919896291815No Hit
CGGGACGCGCAGACCGGAAACGGAGTCGCGTACCCAGTATACGT3510.10306221022929138No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC3430.10071321398474914No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT3430.10071321398474914No Hit
GATGAGCGGGTTGAACGCCTGTTTAACCTTTTTAGGGTGTTTCT3410.10012596492361357No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)