FastQCFastQC Report
Sun 21 May 2023
EGAF00007929809

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929809
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences340571
Sequences flagged as poor quality0
Sequence length31
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG52071.5289029306664397No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24310.7138012338102774No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC16760.4921147132316023No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG14010.41136796732546227No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13650.4007974842250221No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG12610.3702605330459728No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12530.3679115368014305No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12390.3638007933734816No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11430.33561283843897455No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG10890.31975711378831434No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG10810.3174081175437721No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG10370.3044886381987897No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC9960.29245003244551065No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG9590.28158592481450273No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC9420.27659430779485045No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9210.270428192652927No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8910.26161945673589354No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7740.22726538665946305No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGG7080.2078861676419895No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG6610.19408581470530376No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6260.18380895613543138No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC6170.18116633536032134No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6090.1788173391157791No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5980.1755874692795335No Hit
GCCCGCCCGGAAACTCCATCCCCGGCAATCC5710.16765960695420337No Hit
GCAAGCGAACCGGAGGACAAATCTCCGCGCG5630.16531061070966113No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG5590.16413611258739No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG5130.15062938418127203No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG5120.15033575965070425No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4920.1444632690393486No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT4820.1415270237336708No Hit
GCTTCCGAACCGGAGGACAAATCTCCGCGCG4600.13506728406117963No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4470.13125016516379845No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG4440.13036929157209512No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG4350.12772667079698508No Hit
ATGCGCGCTGCTCGTCGTCTGGCCGCTGGCA4040.11862431034938382No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4030.11833068581881603No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC3930.11539444051313823No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG3890.1142199423908671No Hit
CCGCCGCGCACTCCAACCTGGGAATCTCCGG3780.1109900725546215No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT3750.11010919896291815No Hit
GCACGCCCGGAAACCCCGTCCCCGGCAATTC3590.10541120647383365No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG3530.10364945929042695No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA3480.10218133663758805No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)