FastQCFastQC Report
Sun 21 May 2023
EGAF00007929816

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929816
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences433952
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT25120.578865865349163No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT14200.32722513089005234No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12600.29035469360666616No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG12420.28620676941228523No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11630.26800199100361327No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11550.26615846913944397No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG10510.24219268490524298No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10380.23919696187596784No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10170.23435771698252342No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8620.19863948086424307No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7850.18089558292161345No Hit
TTTGTCGATGGTCTGCTCCAGGTTACCAAAGAAGCCTGCTTTTG7670.1767476587272325No Hit
GTCGTGACGTTTCAGCGGGAATGGGCCACCCAGATCGTCGATGG7080.16315168497898386No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA7020.16176904358085686No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6740.1553167170562643No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6500.14978615146375635No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6180.14241206400707912No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6110.14079898237593097No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5810.13388577538529606No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5710.13158137305508444No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5680.13089005235602094No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5540.12766388909372467No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5410.12466816606444953No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5050.11637231767568762No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4960.11429835557849716No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA4860.11199395324828552No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT4760.10968955091807389No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4580.10554162672369294No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4410.10162414276233317No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG4400.101393702529312No Hit
GTTCGGCAGGGTCGGCTGGCCGATCTGGTTGGATTTCGGGATGT4400.101393702529312No Hit
GTAGTTCGGGTCGATATCTGCGACACCTTCGGCGTCCAGCATTT4340.100011061131185No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)