FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929817

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929817
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences433952
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG65491.5091530860556006No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA27170.6261061131185016No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26520.611127497972126No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT24580.5664220927660202No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13200.304181107587936No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13180.30372022712189367No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11940.2751456382272694No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11860.2733021163631001No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11450.26385406680923235No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11120.25624953911953396No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10550.24311444583732766No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10380.23919696187596784No Hit
GTGAACGCAAAAATTGATCGCCTGAACCAGA8260.19034363247548117No Hit
GAACCGATCTACGCTACCATCGACGACCTGG8120.18711746921318487No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7710.17766941965931715No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG6820.1571602389204336No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6750.15554715728928545No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6170.14218162377405796No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5960.13734237888061354No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5850.1348075363173807No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5720.1318118132881056No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5400.12443772583142837No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4870.11222439348130668No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4720.10876778998598924No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4710.10853734975296808No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4570.10531118649067178No Hit
AGCCTGGGTTCCCTGAGCTCTAACCCAAGCT4460.10277634392743898No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4370.10070238183024852No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)