FastQCFastQC Report
Sun 21 May 2023
EGAF00007929819

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929819
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483601
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA33210.6867231457337764No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31720.6559126221823363No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT28900.5976000876755838No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC15760.3258884907185883No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15310.3165832990419788No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14720.30438315884375755No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA14400.29776613365150195No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG14190.2934237108690842No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG13020.2692302125098997No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12640.26137249509409616No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12260.2535147776782926No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12220.2526876495292607No Hit
GAACCGATCTACGCTACCATCGACGACCTGG9560.19768362761863603No Hit
GTGAACGCAAAAATTGATCGCCTGAACCAGA9140.18899878205380055No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG8940.18486314130864082No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8710.1801071544517071No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7510.15529330998074858No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7370.15239836145913677No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7060.14598811830413916No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6640.13730327273930368No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6640.13730327273930368No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6530.13502867032946583No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5960.12324209420576054No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5490.11352333845463512No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5190.1073198773368955No Hit
CCGGATTTTGAACAGAACATTGCGACCACCA5150.10649274918786356No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4970.10277067251721976No Hit
AGCCTGGGTTCCCTGAGCTCTAACCCAAGCT4960.10256389047996178No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4860.1004960701073819No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4850.10028928807012391No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)