FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007929820

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929820
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences353046
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17560.49738560980722063No Hit
GTCATCGTCCTCAACAATAATCGGATCATCCGGCAGACGCGGCG14620.41411034256159257No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT10460.29627867190111207No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT9570.2710694923607689No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG7180.20337293157265626No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA6590.18666122828186693No Hit
GGTACCGCTGTTCAGGGTGTACTGCTGGAACAGCTGCTTCCACG5580.1580530582417022No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5290.1498388312004668No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5290.1498388312004668No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5210.1475728375339191No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5150.1458733422840083No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG4970.140774856534276No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4930.13964185970100215No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4880.1382256136594098No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA4660.13199413107640365No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG4620.13086113424312978No Hit
CGGGCAGGACAGACCAGAGGTCAGCTTACAGCGGCATACGTTTG4470.12661239611835284No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG4320.1223636579935759No Hit
CGGGGTCAGGCGAGGCTGGGACAGCGGAGACAGAATGGTCGGCG4220.11953116591039128No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG4170.11811491986879898No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4160.1178316706604805No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG3920.11103368966083739No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG3880.10990069282756354No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG3880.10990069282756354No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG3800.10763469916101585No Hit
ATTAGCCGCGAAGGTGTTACCGGCAATGATGGCCTGGCCGCCCA3730.1056519547027866No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG3630.10281946261960198No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)