FastQCFastQC Report
Wed 31 May 2023
EGAF00007929821

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929821
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences353046
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG17140.48548914305784513No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17130.4852058938495267No Hit
CCAAAAGCTGCAAAACCGTGGCTGCGTGCTC15190.43025554743574496No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11390.3226208482747291No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10270.29089693694306124No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA9810.27786747336041195No Hit
ATGTCCAACATGGACATCGATGGTATTAACA7290.20648867286415934No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6160.17448151232417305No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5650.16003580269993145No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5590.15833630745002067No Hit
GGCACTTCCGCTTTCGGTGATTCCGCGGACC5480.1552205661585176No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5320.1506885788254222No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5280.14955558199214833No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5220.14785608674223755No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5040.14275760099250523No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5000.14162460415923137No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4650.1317108818680852No Hit
CTGATCCTGGGCCTGGTTCTGGAACAGGTGC4480.1268956453266713No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4390.12434640245180516No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4340.12293015641021285No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4300.12179715957693897No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4230.11981441511870974No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG4080.11556567699393279No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4070.11528242778561434No Hit
GCCAACTACATCGTCCGTCAGAGCCGCGGTG4040.11443268016065894No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4030.11414943095234048No Hit
GCTGCTTCTAGCGATGCACTGGAAGCCCTGG3960.11216668649411125No Hit
GTCGTTGAAGGCAGCCCGGCGGCGGCAAACG3890.11018394203588201No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG3860.10933419441092664No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG3740.10593520391110507No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC3550.10055346895305427No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)