FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929822

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929822
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences322828
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16550.5126568946931493No Hit
GTCATCGTCCTCAACAATAATCGGATCATCCGGCAGACGCGGCG13260.4107450407027891No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT10470.32432131041917056No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT7950.24626116693719255No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG6340.1963894086014844No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA5800.17966223499820336No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG4970.1539519496450122No Hit
GGTACCGCTGTTCAGGGTGTACTGCTGGAACAGCTGCTTCCACG4890.15147384985193355No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG4770.14775670016231554No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4730.1465176502657762No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4660.14434931294683237No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4580.1418712131537537No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4390.13598572614519186No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG4240.13133928903316935No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4230.13102952655903452No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG4120.12762213934355138No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4100.12700261439528168No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA3890.1204976024384502No Hit
CGGGCAGGACAGACCAGAGGTCAGCTTACAGCGGCATACGTTTG3720.11523164037815803No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG3640.11275354058507936No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG3640.11275354058507936No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG3600.11151449068854002No Hit
CGGGGTCAGGCGAGGCTGGGACAGCGGAGACAGAATGGTCGGCG3560.11027544079200069No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG3360.10408019130930403No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG3260.10098256656795568No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)