FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929823

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929823
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences322828
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48631.5063749117176948No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16210.502124970572565No Hit
CCAAAAGCTGCAAAACCGTGGCTGCGTGCTC13640.42251601471991274No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10140.31409914877272105No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9860.30542579949694576No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA8240.25524427868710275No Hit
ATGTCCAACATGGACATCGATGGTATTAACA6140.19019415911878773No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5550.17191817314483254No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5050.15643004943809086No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4880.1511640873777987No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4810.14899575005885488No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4720.14620788779164137No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4580.1418712131537537No Hit
GGCACTTCCGCTTTCGGTGATTCCGCGGACC4540.14063216325721437No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4450.13784430099000086No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4270.13226857645557388No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4230.13102952655903452No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4120.12762213934355138No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC3990.12359522717979854No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC3980.1232854647056637No Hit
CTGATCCTGGGCCTGGTTCTGGAACAGGTGC3750.11616092780056253No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG3720.11523164037815803No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG3590.11120472821440519No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC3570.11058520326613552No Hit
GCCAACTACATCGTCCGTCAGAGCCGCGGTG3460.10717781605065237No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG3370.10438995378343886No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG3300.10222161646449503No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)