FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007929824

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929824
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444423
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12240.2754132886911793No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8830.19868458653130014No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT8020.18045870713261916No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7630.1716832837184394No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6440.14490699176235255No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6370.14333191576493567No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT6330.1424318723378403No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5920.1332064272101129No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5710.12848119921786225No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4850.10913026553531209No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC4460.10035484212113234No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)