FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929825

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929825
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444423
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21470.4830983094934331No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16560.37261797881747794No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16210.36474259883039356No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12360.27811341897246544No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT8700.1957594453932402No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA7230.16268284944748584No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6670.15008224146815083No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6320.14220686148106648No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6000.13500651406430358No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5450.12263091694174244No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5340.12015579751723021No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG5160.1161056020953011No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4970.11183039581659814No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT4580.10305497240241841No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)