FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929827

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929827
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455895
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17090.37486701981815984No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16800.36850590596518934No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14250.3125719738097588No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12910.28317924083396395No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT8510.18666578927165248No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7060.1548602200067998No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6890.15113129119643778No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6300.13818971473694602No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6090.13358339091238114No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5480.12020311694578795No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5250.11515809561412167No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT4870.10682284297919478No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4710.10331326292238345No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG4590.10068107787977496No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4560.10002303161912283No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)