FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007929828

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929828
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences395099
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA31620.8003057461547611No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA28300.7162761738197262No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19640.4970906026084601No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA14980.37914547999362186No Hit
GGCACCAACGAACGCACGCACAGCGGATGCGGTTACGTCCTGCG14300.36193460373222913No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC12340.31232678391997953No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG12050.30498685139673853No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9510.24069916653800694No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8740.22121038018319458No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG8630.21842626784679284No Hit
CTGCTGACGCGGACGCGGGCGGAACGGACGACGGTAACGTGGAC8090.2047588072862751No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7410.18754793102488237No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG7050.17843629065120387No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6560.16603433569814147No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG6540.16552813345515935No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6100.15439168410955229No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5690.14401453812841844No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5560.14072422354903455No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5420.13718080784815959No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA4810.12174163943720435No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4790.12123543719422221No Hit
AGATGGCGCGTTGGAAGTAACTTTGTTGTTGGTGTCATCGGCGG4560.11541411139992762No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT4520.11440170691396334No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4270.10807417887668659No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)