FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007929829

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929829
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences395099
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT66791.690462390438852No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG52271.3229595620338195No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19470.4927878835431119No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC15660.3963563562550146No Hit
ATGATGGCTCGTCGCACCGTTGATTTCAAAA14720.3725648508348541No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC12140.30726476149015813No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11450.2898007841072744No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG11030.27917053700464944No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9050.22905651494941776No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8880.22475379588406957No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC8530.21589525663188214No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8310.21032703195907862No Hit
CGTCCGCCGAACCAGCAGCAGCCGATCGAGG8110.2052650095292572No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7130.18046109962313242No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6510.16476883009068613No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6160.1559102908384987No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5820.14730485270780233No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5750.14553314485736485No Hit
GCGGAGCAGCACACGCCGATGAAGGCGCACG4850.12275404392316862No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG4770.12072923495124008No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4640.11743892037185616No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4530.1146548080354544No Hit
CATTCTAACGATCAGCACGCGGGTGATCACA4300.10883348224115981No Hit
GAAAACGTACTGATCGAGCTGAGCGATTCCT4000.10124044859642772No Hit

[OK]Adapter Content

Adapter graph