FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929830

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929830
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences534414
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18180.3401856987279525No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT16970.31754407631536596No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12360.23128136613187528No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11230.2101367104903689No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC9120.17065421190313126No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8310.15549742334594527No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8030.15025803964716491No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7280.13622397616828902No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6950.1300489882375836No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6920.12948762569842856No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6400.11975734168640792No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5610.10497479482199194No Hit
AGATTTCATAGCGAATGGCAGGGTCGCAATGTCTGCAATGGTCG5420.1014194987406767No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA5400.10104525704790668No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)