FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007929831

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929831
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences534414
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45760.8562649930578166No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA31480.5890564244200189No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18020.3371917651857923No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13140.24587679214990626No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11690.21874426942407946No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11560.21631169842107428No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10140.18974053823440254No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9280.17364814544529147No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8670.16223377381580573No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7700.14408305171645952No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6710.12555808792434328No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6140.1148921996803976No Hit
CCGGAAAAACTGCCGAAAACTATCGAGAAAC5570.10422631143645188No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG5380.10067101535513666No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)