FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929837

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929837
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences565548
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46570.8234491148408271No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17740.31367806092497896No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9680.17116142219581718No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7160.1266028701365755No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6170.10909772468473056No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)