FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929843

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929843
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences525031
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG25190.4797811938723618No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16080.3062676299113767No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12020.22893886265763352No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11980.2281770028817346No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG11630.22151072984261883No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC10320.19655982218192833No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9320.17751332778445464No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9250.17618007317663148No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8700.16570450125802094No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8670.16513310642609674No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC8630.1643712466501978No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG8610.16399031676224832No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8380.15960962305082937No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7620.1451342873087494No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG7210.13732522460578517No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7150.13618243494193674No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG6000.11427896638484204No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5940.11313617672099362No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5870.11180292211317044No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5810.11066013244932203No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5670.10799362323367573No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5500.1047557191861052No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)