FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929845

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929845
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences519536
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42320.8145730036032152No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20780.39997228296017984No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18980.3653259831849959No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12280.23636475624403314No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10200.19632903205937607No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG10110.19459671707061688No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8890.17111422500076992No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8620.16591728003449233No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8300.15975793785223738No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA8070.15533091065874166No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8050.1549459517723507No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6320.12164700809953496No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6250.1202996519971667No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6240.12010717255397124No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6020.11587262480367097No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5820.11202303593976164No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5780.11125311816697976No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)