FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929849

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929849
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences547357
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24750.4521728962998555No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17660.32264134742042216No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13570.2479186344561228No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG12920.23604338667451044No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11300.20644661528033806No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG11010.20114842780854175No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9580.17502288268899457No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9570.17484018656927747No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8960.16369572326653353No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8780.1604071931116255No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8180.14944542592859872No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG7690.14049331606246016No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7190.13135851007660448No Hit
TTCGCGGGCGGTCTGCTGGATGGCGTTCAGC6820.12459875364707129No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6590.12039674289357769No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG6450.1178389972175381No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTA6270.11455046706263004No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6190.11308889810489316No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6030.11016576018941934No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6030.11016576018941934No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5880.10742531839366264No Hit
CACACCCCTCCGATGCCGTCTATCGGTCTGG5850.10687723003451129No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5660.10340600375988614No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5580.10194443480214925No Hit

[OK]Adapter Content

Adapter graph