FastQCFastQC Report
Sun 21 May 2023
EGAF00007929851

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929851
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences528852
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC29570.5591356371915016No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT23040.4356606385151234No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC22860.43225703977672386No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG22500.4254498422999251No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC18950.35832331162593695No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA18570.35113793651153824No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16910.31974919259074375No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG15180.2870368269383495No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC15100.2855241163879497No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC13540.25602626065515494No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA12380.2340919576743588No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11640.22009938508316126No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10940.2068631677671636No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10890.20591772367316374No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10760.2034595690287642No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA10050.19003426289396655No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9520.1800125554975683No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7880.14900198921437377No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7830.14805654512037394No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7300.1380348377239757No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTT6150.11628962356197953No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6090.11515509064917973No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)