FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929852

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929852
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510571
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT22330.4373534728764462No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC21930.42951910703898183No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT20560.4026864040456666No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG20350.39857336198099774No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG17370.3402073364918885No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA17200.33687773101096613No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA14610.2861502122133846No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG14160.27733655064623725No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA13030.2552044671554005No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG10970.21485748309245925No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG10150.19879703312565733No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10150.19879703312565733No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9850.1929212587475591No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT9740.1907668081422564No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT9440.18489103376415816No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9320.18254072401291888No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7070.13847241617718203No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6460.1265250082750489No Hit
CGGAGCCTGCGGTGGCGGCGGCTCTTGATAACCCTGATACGGCG5460.1069390936813881No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5300.10380534734640236No Hit
CGGGTCCTGGGACCACGGAGCCCACGGATGACGGTAGCACGGGT5220.1022384741789095No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)