FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929853

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929853
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510571
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41490.8126195964909875No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC28780.5636826220055585No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21600.4230557552230738No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG20960.41052076988313085No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC20930.40993319244532106No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA18690.3660607437555208No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC17960.3517630261021484No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16500.3231675907954036No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14410.2822330292946525No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC14410.2822330292946525No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC12560.24599908729637993No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA11390.22308356722179676No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11020.21583677882214225No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10650.20858999042248777No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10480.20526038494156543No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA9930.19448813191505196No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9930.19448813191505196No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7300.142977176533724No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7180.1406268667824847No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6570.12867945888035162No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6210.1216285296266337No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTT5670.11105213574605687No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)