FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929854

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929854
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences543814
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC20950.3852420128941145No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT15460.28428837801159956No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14170.26056703211024357No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12900.23721345901355975No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9990.18370251593375675No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8330.15317737314596536No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7600.13975366577543058No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7530.1384664609590779No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6990.1285365952329289No Hit
ACGCAGGCCGGATTCGTTATAGACGAAACGCGCGTCAACGTTGT6500.11952616151846035No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5990.11014795499931962No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5900.10849297737829477No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5740.1055507949409173No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5680.10444747652690073No Hit
AACGCTACGGATGTTCGCCACGCACAGGGTGTTGTTGGTAGACG5670.10426359012456465No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5660.10407970372222855No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5460.1004019756755067No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)