FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007929855

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929855
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences543814
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC26430.48601176137429336No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17590.32345618170918733No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15380.28281728679291085No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14290.2627736689382767No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13650.25100493918876676No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10940.20117172415568557No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9160.16843994453986105No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7800.14343139382215242No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7660.14085698418944714No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7470.13736314254506138No Hit
TTCAGCTACGGTAATGCTAACTGGAAAGACC7390.1358920513263726No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7180.13203043687731467No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6550.12044559353014082No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6460.11879061590911598No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6390.11750341109276333No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6290.1156645470694024No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6290.1156645470694024No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6230.11456122865538584No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6050.11125127341333617No Hit
GAAGTCTCCATTGCCGAACCGACCACTTACA5900.10849297737829477No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5820.10702188615960605No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5710.10499913573390902No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5680.10444747652690073No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5640.10371193091755636No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)