FastQCFastQC Report
Sun 21 May 2023
EGAF00007929856

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929856
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences608179
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC33180.5455630661367789No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT32550.5352042737417767No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT26810.4408241652539795No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC21490.3533499183628504No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT17990.2958010717239497No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG16720.2749190616578343No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC15200.24992641968894025No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG15050.24746004054727308No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG15020.24696676471893966No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT14110.23200406459282547No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12860.21145090507893233No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG12600.20717584790004262No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG11670.1918842972217061No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10470.17215326408836873No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10370.17050901132725726No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT10280.16902918384225696No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG9500.15620401230558767No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA9480.15587516175336538No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9120.14995585181336415No Hit
CGTACTCCTGGCGACAGAGAAAATGGCGGTGACGTTATTTAAAT8850.14551636935836323No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG8640.1420634385600292No Hit
CGGCGAAGCGACCGTTGAAAAAGGTGGATGCAACTGATTTAAAT8440.1387749330378063No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG8120.13351332420224968No Hit
CCCATGACGGATTCCTGTCACCGAAGGATGCGTACTCCTGGCGA7910.13006039340391562No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA7540.12397665818780325No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7500.12331895708335867No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT7020.11542654383002372No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA6910.11361786579280114No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6900.11345344051668999No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6700.11016493499446708No Hit
GTACTCCAGTCGGTGTTTCCGCCCTCTACGCGGCGAAGCGACCG6690.11000050971835594No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT6690.11000050971835594No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC6650.10934280861391137No Hit
TGCATCTTCGAAGTCTTCATCATCGTCGTCGTCTTCTTCTTCAC6490.10671200419613304No Hit
GTTTTTGCTGCAGGTAGCACAAGAAGTGTCTTTACGGCCATCGA6260.10293022284557671No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6240.10260137229335443No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)