FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007929857

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929857
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences608179
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA73031.2007977914396912No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA32590.5358619748462212No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA28800.4735447952000973No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT27300.4488810037834256No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24820.4081035353078617No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA21130.3474306084228492No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA19650.32309566755839975No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC18110.29777417503728343No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT17590.2892240606795039No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA15850.2606140626361647No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG14500.23841665036116014No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13910.22871555907060256No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12990.2135884336683772No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12540.20618929624337573No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG12270.2017498137883748No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA11170.18366303341614887No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10550.17346866629725788No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT10430.17149556298392413No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10370.17050901132725726No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG9840.16179447169336658No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9770.1606434947605886No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT8820.14502309353002982No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8660.1423922891122515No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG8160.13417102530669425No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG8020.1318690714411382No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG7220.11871504935224662No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT6850.11263131413613427No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6810.11197361303168969No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6740.11082263609891167No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG6730.11065821082280052No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC6720.11049378554668937No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6610.10868510750946679No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT6360.10457447560668816No Hit
GTCGGCCACTCTAACCCGTCCATCGCAGCCT6330.10408119977835471No Hit
GTACAGCCAGTTACCCCGAGCAAGCCAGCAC6140.10095711953224298No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)