FastQCFastQC Report
Sun 21 May 2023
EGAF00007929861

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929861
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences515023
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43440.8434574766563823No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG22810.4428928416789153No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20900.40580711929370145No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14390.279404997446716No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG13330.25882339235335117No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12800.24853258980666884No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11770.22853348297066345No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10800.2096993726493768No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10410.20212689530370487No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7580.1471778930261367No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7280.14135291045254292No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7240.14057624610939706No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6700.13009127747692822No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5530.1073738454399124No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5470.10620884892519364No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5200.1009663646089592No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)