FastQCFastQC Report
Wed 31 May 2023
EGAF00007929865

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929865
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477347
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38830.8134543633876403No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36390.7623385084644922No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20180.4227532591594794No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18720.39216754268907106No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18310.38357840313231256No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12760.26731078230302063No Hit
ACTCTGACCGGTAAAGTTGAGGATAACCACG12220.2559982570331436No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC11460.24007692517183515No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10880.2279264350671524No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10700.22415559331052673No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10250.21472848891896254No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG9820.20572036694480114No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9430.19755020980544552No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8830.1849807372833599No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8720.1826763339876442No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8400.17597261530919855No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7680.16088924828269582No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7520.15753738894347297No Hit
GCGAAACTGCTGTATAACAACCTGGATGCAT7100.14873875817801305No Hit
AACCTGGATGCATTCGGTATTATGGATTACA7040.1474818109258045No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC7000.1466438460909988No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC6830.14308249554307453No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6750.14140656587346312No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6750.14140656587346312No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6390.13386488236021174No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5980.12527574280345324No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5710.11961948016851473No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5700.1194099889598133No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5510.1154296559944862No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG5380.11270627028136765No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5330.11165881423786052No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG5230.10956390215084624No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5090.10663102522902627No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)