FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007929866

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929866
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences531382
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG26980.5077326668950022No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT26340.49568860066769294No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC23370.4397966058315863No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT22720.4275643510694755No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG18830.35435901103161194No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA16250.3058063690527718No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT15820.2977142620562985No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15200.2860465728985927No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA14790.2783308429717228No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13620.2563127843999232No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT12330.23203646341050316No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10870.20456093732945413No Hit
ACCCTGGTGCAGACCCAGGACTGGAGACAGTTCCGGCATGGACG10500.19759796154179105No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG9750.18348382143166309No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG9200.17313345201756927No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG9050.1703106239955437No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT8800.16560591062550106No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8380.1577019921638294No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7870.14810437688894243No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG7520.1415177781708827No Hit
ACGCGGATCTTGACGGTTCGGCGGGTAGCCGTCGGAAGAGTCGG7330.1379421960096503No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG7100.13361385970921108No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6900.12985008901317696No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG6550.12326349029511727No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6240.1174296457162644No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5870.11046666992860128No Hit
CACGCAGGCACCACGACGGCGACGAGACGGCGGCGGAGTAGGTT5810.10933753871979104No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5660.10651471069776544No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5610.10557376802375691No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5610.10557376802375691No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5510.10369188267573987No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)