FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929867

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929867
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences531382
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC30850.5805616298632622No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30380.571716768727582No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG29240.5502632757601875No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT28340.5333263076280341No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC22210.41796673579458843No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG19700.3707314135593603No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17350.3265071078809595No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16740.3150276072580554No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15800.29733788498669506No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC13100.24652698059023453No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10950.20606644560786777No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA10420.19609245326337738No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9910.1864948379884904No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9710.18273106729245628No Hit
CGTGGCCAGAGCCGTGGCCGTGGCCGTGGTC9610.18084918194443922No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9380.17652084564399997No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA9320.17539171443518975No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9080.1708751895999488No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8470.15939568897704476No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG8300.15619648388541577No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT8120.15280909025898506No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7590.14283509791449467No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7190.13530755652242643No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA6990.1315437858263923No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6830.12853276926956503No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6820.12834458073476332No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6710.12627450685194455No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6590.12401624443432407No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6290.11837058839027292No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6120.11517138329864392No Hit
GACAAAGCGGAAGCTCAGAGCACCCCGGAAC5950.11197217820701492No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5830.10971391578939445No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5710.10745565337177398No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5680.10689108776736887No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5470.10293912853653304No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5430.10218637439732621No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5410.1018099973277228No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)