FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007929868

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929868
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences516926
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG27270.5275416597346623No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT24350.4710538839214897No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC22500.43526539582067836No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT21630.4184351338489455No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG19080.36910505565593527No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15280.2955935665839985No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14910.2884358689638362No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14010.27102525313100906No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA13670.26444790937194107No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12710.24587658581692542No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT12260.2371712779005119No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10640.20583216940142304No Hit
ACCCTGGTGCAGACCCAGGACTGGAGACAGTTCCGGCATGGACG9940.19229057930922416No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG9440.1826180149576535No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG9410.18203766109655928No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG9130.17662102505967972No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8120.15708244506950705No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT8090.15650209120841282No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG7820.15127890645856468No Hit
ACGCGGATCTTGACGGTTCGGCGGGTAGCCGTCGGAAGAGTCGG7340.14199324468105687No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7300.1412194395329312No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7100.13735041379230295No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG6190.11974634667244442No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG6030.11665112607994181No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5940.1149100644966591No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5800.11220174647821932No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5640.10910652588571673No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5630.10891307459868531No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5580.10794581816352825No Hit
CACGCAGGCACCACGACGGCGACGAGACGGCGGCGGAGTAGGTT5560.10755891558946543No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5320.10291608470071152No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)