FastQCFastQC Report
Sun 21 May 2023
EGAF00007929869

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929869
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences516926
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41900.8105608926616189No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32400.6267821699817768No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC29990.5801604098072064No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG28010.5418570549749867No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT26140.5056816643001126No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC20910.4045066411826838No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG19560.3783907174334431No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16990.32867373666637No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14780.28592100223242783No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14150.27373357114944885No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC12690.24548968324286263No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10610.2052518155403288No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9860.19074296901297286No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA9770.1890019074296901No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9660.1868739432723446No Hit
CGTGGCCAGAGCCGTGGCCGTGGCCGTGGTC9420.1822311123835907No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9020.17449306090233418No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8650.1673353632821719No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG8430.16307943496748084No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT7830.1514723577455961No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7720.14934439358825055No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7450.1441212088384024No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6870.13290103419058047No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6660.1288385571629208No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6480.12535643399635538No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA6100.1180052850891617No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6030.11665112607994181No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6000.11607077221884757No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5920.11452316192259626No Hit
GACAAAGCGGAAGCTCAGAGCACCCCGGAAC5820.11258864905228214No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5620.1087196233116539No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5600.10833272073759108No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5590.10813926945055966No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5520.10678511044133977No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5390.10427024370993139No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)